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Online Journal of Veterinary Research©

Volume 23 (6):594-605, 2019.


Prevalence and phylogeny of Cysticercus Tenuicollis spp determined by PCR from 6909 slaughtered sheep over 12 months.

 

Athmar K Abbas Al-Azawi, Suha Tarik Al-Biatee.

 

                          Department of Parasitology, College of Veterinary Medicine, University of Baghdad, Iraq.

 

ABSTRACT

 

Al-Azawi AWA, Al-Biatee ST., Prevalence and phylogeny of Cysticercus Tenuicollis spp determined by PCR from 6909 slaughtered sheep over 12 months, Onl J Vet Res., 23 (6):594-605, 2019. We report prevalence and type of Cysticercus (C) tenuicollis excised from sheep metacestodes of adult Taenia. hydatigena at meat inspections over a 1 year period at a Baghdad, Iraq, abbatoir. C. tenuicollis cysts were subjected to DNA extraction for typing by PCR. From 6909 ovine carcasses, 983 (14.22%) were infected with 646 males (~13%) and 337 females (~17 %) 740 8-11 month old (~19%) and 183 3-7 month (~7%) (P< 0.05). C. tenuiocollis was found throughout the year but more during August-September (~21%) and less in January-March, 42(~5-7%) (p<0.05). Mt-CO1 gene of 11 C. tenuiocollis isolates were amplified for a partial sequence of accession number JN827307 with 99% compatibility to T. hydatigena in  GenBank. Partial sequences of mitochondrial DNA coding for cytochrome c oxidase subunit 1 (cox1) gene of 11 C tenuiocollis isolates were identified for phylogenetic tree analysis with Geneious 9 software compared against NCBI-GenBank sequences. We found low genetic variation between isolates.

 

Keywords: Cysticercus tenuicollis, sheep, risk factor, PCR, phylogeny.

 

 

 

 

INTRODUCTION

 

Cysticercus tenuicollis is the metacestode of adult Taenia hydatigena tapeworm life cycle maintained in domestic and wild animals infected by larvae (Taylor et al., 2007). Dogs discharge eggs in feces and when ingested, onchospheres hatch in the small intestine and reach blood via the liver and peritoneum where they develop to C. tenuicollis  with translucent clear jelly like fluid and one invagination scolex bearing rostellar hooks, which attach to serous surface of liver, spleen, lung, great omentum, intestinal mesentery, kidney, heart and peritoneal cavity ( Radostits et.al., 2007), However, aberrant location and unusual locations of C. tenuicollis vesicle have been described (Payan-Carreira et.al,  2008). Migration of cysticercii through liver produces hemorrhage, fibrosis, eosinophilia and peritonitis often a fatalco-infection with Clostridia (Oryan et al., 2012: Darzi, 2002). Infestations cause high morbidity and mortality in livestock and condemnation at abbatoirs (Wondimu et al., 2011: Endale et al., 2013 and Nimbalkar et al., 2011).  Genetic characterization of T. hydatigena isolates has been determined (Radfar et al., 2005: Mosaab et al., 2016  and Alaa Azmy, 2014 ) but in Iraq remain unknown. We report prevalence and phylogeny of Cysticercus Tenuicollis spp in Iraq determined by PCR from 6909 slaughtered sheep.

                    

MATERIALS AND METHODS

 

At Alshulla abbatoir, Iraq, 6909 sheep carcasses were inspected from August 2017 to 30 July 2018 for C. tenuiocollis. There were  4910 male and 1999 females grouped into 2678 3-7 month old, 3845 8-11 month  and 386  >12 month sheep.  Eleven well defined C tenuicollis cysts were excised into ice for typing at the Department of Parasitology, College of Veterinary Medicine, Baghdad University, Iraq.  Cysts were cut into small pieces placed in phosphate-buffered saline (PBS) and Genomic DNA was extracted from 20μg of each cyst sample with DNeasy TM Kit (Qiagen company,Germany) following the manufacturer’s procedure (Qiagen, China).  DNA was confirmed by Nano drop spectrophotometer (THERMO, USA) for Purity and concentration at an absorbance of 260/280 nm .  Mitochondrial DNA coding for cytochrome c oxidase subunit 1 (COx1) genes was amplified with primers JB3 and JB4. (Promega, USA) as described by Utuk  and Piskin   (2012) in Table 1 yielding a fragment of ~446bp.

           

Table 1:  Primer Sequence and PCR product size.

PCR product size

Sequence                                  

Gene

446bp

(5-TTTTTTGGGCATCCTGAGGTTTAT-3)

F

JB3

.  (5-TAAAGAAAGAACATAATGAAAATG_3)

R

JB4

 

 

 

 

 

 

 

The reaction mixture consisted of 2μl of template DNA, 10μl from 2X GoTaq Green Master mix (Promega, USA, 8.5μl  of dNTP mix (10mM), 1μl of each primer(10 pmol) to volume of 25μl with dH2O.  Thermocycling conditions are shown in Table 2.

Table 2: PCR thermocycler  reaction  conditions

PCR step

Temp.

Time

Repeat

Initial Denaturation

95C

5min

1

Denaturation

95C

30sec.

30 cycle

Annealing

58C

30sec

Extension

72C

60sec

Final extension

72C

5min

1

Hold

4C

Forever

-

 

Amplified PCR products were subjected to submarine gel electrophoresis in 1.5% agarose stained with ethidium bromide run simultaneously on a parallel well at 100 volts for 1h. After electrophoresis, the gel was subjected to UV Transilluminator (UVP, USA) for visualization of nonspecific reaction and band size 100bp DNA ladder (Promega, USA). Eleven positive PCR products of C tenuicollis isolates were remitted Bioneer, Korea at 4C for phylogenetic tree analysis. Data were analyzed using Statistical Package for the Social Sciences (spss) version 17 for windows software and Microsoft excels 2010. Differences between groups were analyzed using chi -square test with P < 0.05. (AL-Ukaelii and  AL -Shaeb,1998 ).

 

RESULTS

 

Results are shown in  Figure 1 and Tables 3 to 7 below.

 

Figure 1:  C. tenuicollis from viscera of sheep.

 

Table 3. Prevalence (%) of C. tenuiocollis  in slaughtered sheep

P-Value

Chi-Square

(%)  

Infected

Tested

Sex

0.529

15.96

13.10

646

4910

Males

16.58

337

1999

Females

14.22

983

6909

Total

 

 

 

 

 

   

 

Table 4. Incidence for C. tenuicollis  by age (sheep)

(%)  

Infection

Tested

Months (Age)

6.83

183

2678

3-7

19.24**

740

3845

8-11

15.54*

60

386

>12

14.22

983

6909

Total

199.86

Chi-Square

0.004

P-Value

 

 

 

 

 

 

 

 

 

 

 

Table 5.  Presence of C. tenuiocollis in slaughtered sheep by month.

(%)

Infected

Tissue

Month      

20.98

128

610

August  (2017)

20.52

125

609

September

18.73

113

603

October

17.93

105

606

November

13.93

84

603

December

7.0

42

600

January2018

5.16

31B

600

February

7.0

42B

600

March

12.0

72B

600

April

14.86

70A

471

May

15.12

72A

476

June

18.64**

99A

531

July

14.22

983

6909

Total

165.29

 

Chi-Square

0.489

 

P-Value

 

   

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

DNA extraction from eleven tissue isolates yielded genomic DNA concentrations 40-60ng. The target mt cox1 gene segment of each of 11 DNA samples was amplified detected by PCR with JB3 and JB4 primers to yield a DNA fragment size of ~446 bp as shown in Figure 2, below. 

 

Figure 2: Amplification of  mt-CO1 gene with JB3 and JB4.5 primers. M: Marker bp

 

The DNA sequences were edited and aligned with ClustalW (Geneious 9 software) for multiple for multiple  sequence alignment . We found 99%  homology   for sequences  of C. tenuicollis with reference sequences   under accession number JN827307 (Index Table 1 after the reference list)        

 

Figure 3. Nucleotide sequences of partial mt-CO1 for Cysticercus tenuicollis  (JN827307) alignment with published (DQ995656, HQ204206) mt-CO1 sequences of T. hydatigena  gene Bank in the NCBI.

Table 6. Polymorphism nucleotide changes in sense of cytochrome c oxidase subunit I (cox1) gene from sheep.

Identities

Expect

Score

Sequence ID

Nucleotide

Range

Nucleotide

Location

Substitution

Sample

100%

0.0

715

ID: AB792722.1

49 to 444

-----------------

1

99%

0.0

693

ID: JN831306.1

757 to 1143

A>G

1006

Transition

2

100%

0.0

699

ID: JQ710616.1

1 to 387

--------------

3

100%

0.0

699

ID: JQ710617.1

1 to 387

---------------

4

100%

0.0

713

ID: KT372529.1

1 to 386

--------------

5

99%

0.0

726

ID: AB792722.1

49 to 444

A>G

99

Transition

6

100%

0.0

732

ID: AB792722.1

49 to 444

---------------

7

99%

7e-94

353

ID: AB792723.1

251 to 444

G>C

91

Transversion

8

99%

0.0

726

ID: AB792722.1

49 to 444

T>C

291

Transition

9

100%

0.0

732

ID: AB792722.1

49 to 444

------------------

10

 

DISCUSSION

 

Of 6909 carcasses we found 983 (~14%) to be infested (Table 3). Senlik (2008) reported similar findings in Turkey whereas in Iran Radfar et al, (2005) and  Samul and Zewde, (2010) in Ethiopia reported higher level of infestation. These differences may be attributed to grazing behavior and management systems (Senlik , 2008) and/or dogs  which carry Taenia hydatigena with or without offal in proximity of livestock as described by Deplazes et al., (1990). To our knowledge, in Iraq, there is little or no information concerning Taenia hydatigena in dogs.

 

There was no difference in incidence of C tenuicollos between males and females but we did find differences between age groups. We found only ~7% of 3 to 7 month olds to be infested but older ~15-19%. Wondimu et al., (2011) found that young lambs may be infested or have developing cysts which cannot be detected. There may be some degree of immunity which limits infection (Senlik, 2008; Radfar et al., 2005; Samul and Zewde, 2010). Older sheep allow for development of obvious cysts as described by Endale Mekuria et al., (2013).  Our results show obvious rises in infestation during Autumm (Table 5) which is probably due to viable eggs remaining in winter grazing grass eclosing during summer as described by Ghaffar, (2011).   

 

Our partial sequence of mt-CO1 gene amplified product from 11 C tenuicolis isolates (Figure 2) under GeneBank accession number JN827307 was 99% identical with T. hydatigena  cytochrome oxidase subunit 1 (CO1) gene.  Our finding suggests that the cox1 gene sequence was highly conserved among isolatesand suggest low genetic diversity which may be due to  low prevalence. Rostami et al., (2015) in Iran reported 97% overall nucleotide variation in CO1 gene with pairwise nucleotide differences 0.3–3.4%. Phylogenetic analysis did not support genetic variants within the isolates with Iranian T. hydatigena clustered in one clade, along with those from China, Turkey and Scandinavia (Rostami et,al.2015). In Iraq, Athmar (2017) found C. tenuicollis in hyperendemic regions and maintained that identification of T. hydatigena in livestock was epidemiology important. In our study delucidation of T. hydatigena  mitochondrial DNA may be useful for eradication of  C. tenuicollis   in Iraq.  Further phylogenetic studies on T. hydatigena  using larger samples from different locations are needed to confirm or findings

 

REFERENCES

 

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2. Radostits OM, Gay CC.and. Hinchcliff  KW. Veterinary Medicine, 10th Edn, 2007 ;

     1582- 1583.

3. Payan-Carreira. R; Silva F, Rodrigies M and Anjos Pires M Cysticercus tenuicollis  vesicle  in fetal structures 'report of a case, Reproduction in Domestic Animals, 2008; 43( 6):764-766.

4. Oryan A.,Goorgipour S.,Moazeni M and Shirian S.. Abattoir prevalence, organ distribution ,public health and economic  importance of major metacestodes in sheep, goats and cattle in Fars, southern Iran Tropical Biomedicine,2012; 29(3):349-359.

5. Darzi MM. Pathology of Taenia hydatigena cysticercosis in a naturally  infected  lamb. Journal of Veterinary Parasitology. 2002; 16(l 2):173-174.

6. Wondimu, A., Abera, D. and Hailu, Y. A study on the prevalence, distribution and economic importance of Cysticercus tenuicollis in visceral organs of small ruminants slaughtered at an abattoir in Ethiopia. Journal of Veterinary Medicine and Animal Health.2011; 3, 67–74.

7. .Endale M;Shihum S;Jemere B and Desie S .. Sheep and goats Cysticercus tenuicollis prevalence and associated risk factors African journal of Agricultural Research. 2013; 8 (24) pp 3121-3125.

8. Nimbalkar RK., ShindeSS.,KamtikarVN and MuleySP..Study on Taenia hydatigena in the  slaughtered sheep (Ovis bharal) and goats(Capra hircas) in Marharashtra ,India. Global Veterinaria. 2011;6(4);374-377.

9..Radfar MH, Tajalli S and Jalalzadeh M. Prevalence and morphological characterization of Cysticercus tenuicollis (Taenia hydatigena cysticerci) from sheep and goats in Iran. Veterinary Arhiv. 2005;75: 469- 476.

10 .Mosaab A, E, O, Layla O, E, Mohammad ,S, Al-A, Ahmed, M, E, Ahmed, O, E, Abdelnasser A,. H, T. Molecular characterization of Cysticercus tenuicollis of slaughtered livestock in Upper Egypt  governorates. Asian . Pac. J. Trop. Biomed 2016; 6 (8):706-708.

11..Alaa Azmy Yousef Jayousi. Prevalence and Molecular characterization ofCysticercus tenuicollis cysts in sheep slaughtered  in Palestine,2014 .Thesis .Faculty  of Graduate students An .Najah-National  University.

12. Utuk AE and Piskin FC . Molecular Detection and Characterization of Goat Isolate of Taenia hydatigena in Turkey. The Scientific World Journal  doi:10.1100/. 2012;962732.

13. AL-Ukaelii ,S.A. and  AL -Shaeb,S.M.1998 . Statically analysis used SPSS program AL-Shoroq House for Publication and  Advertisement  Amaan, Jordan.

14. Senlik,B. Influence of Host breed, sex and age on the prevalence and intensity of C. tenuicollis   in  sheep. J. Anim. Vet. Adv. 2008 ; 7(5);548-551.

15. Samul, G ,Zewde GG. Prevalence risk factors and distribution of C. tenuicollis in  visceral organ of slaughtered sheep and goats in central Ethiopia. Trop.Anim. Health. Prod. 2010;42 (96)1049-1051.

16.Deplazes,P.;Gottstein,B.;Stingelin,Yand Eckert,J. Detection of  copro-Antigen by ELISA in dogs.1990 .Vet. Parasitol. J .,36(1); 91-103

17.Ghaffar NM. Tenuicollosis in slaughtered sheep at Duhok abattoir.Kurdistan region of Iraq .Bas. J. Vet. Res. 2011; 10 (1);1-16.

18. McManus,D.P..“Molecular discrimination of taeniid cestodes,”Parasitology International, 2006. vol. 55, pp. S31–S37,

19.    Campbell, G., Garcia, H.H., Nakao, M., Ito, A. & Craig, P.S. 2006 ;Genetic variation 19.

20.Rostami S, Salavati R, Beech RN, Babaei Z, Sharbatkhori M, Baneshi MR, . Molecular and morphological characterization of the tapeworm Taenia hydatigena (Pallas, 1766) in sheep from Iran. J Helminthol.  2015 .

21. Abidi SMA, Nizami WA, Khan P, Ahmad M and Irshadullah M. Biochemical characterization of Taenia hydatigena cysticerci from goats and pigs. J. Helminthol. 1989; 63: 333-337.

22. Nazifi S, Ahmadnia S, Bahrami S, Moraveji M, Razavi SM, Moazeni M. Biochemical Characterization of Cysticercus Tenuicullis in Iranian Fat-tailed Sheep. Australian  Journal of Basic and Applied Sciences. 2011;5 (3):248-251.

23.AL-Bakri H. Prevalence of Tenuicollosis among livestock slaughtered at Ninevah Governorate –Iraq.J.Adva,Biom,and Pathobio.Rese. 2012.2;30-39.

24.Athmar KA Alazawi, Detection some chemical  and biochemical  constituents of Cysticercus tenuicollis cyst fluid of Iraqi goat .J.Entom.Zoo.,2017;.5(2); 814-818.

 

Index Table 1 below: Multiple  sequence alignment analysis of   cox1 gene  in local Cysticercus tenuicollis(NO1-NO11)   and NCBI-Genbank  Cysticercus tenuicollis  isolates based on ClustalW alignment analysis using Geneious( 9) software  multiple  alignment   analysis tools.

 

AB792722 Taenia hydatigena mitochondrial cox1 gene for cytochrome c oxidase subunit 1, partial cds, isolate: Th02

--ATTATTAGTCATATATGTTTGAGAATAAGCATGAGTCCTGATGCTTTTGGATTCTATGGATTATTATTTGCTATGTTT

TCAATAGTCTGTTTGGGTAGAAGTGTGTGGGGTCATCATATGTTTACTGTTGGATTAGATGTTAAGACTGCTGTTTTTTT

TAGTTCTGTCACTATGATTATAGGTGTGCCTACTGGTATAAAGGTGTTTACTTGGTTATATATGCTTTTAAACTCTCATG

TGAATAAGAGTGATCCTGTTGTTTGATGAATTGTTTCTTTTATAGTTTTGTTTACTTTTGGTGGGGTTACTGGTATTGTG

TTGTCAGCATGTGTATTAGATAAAGTTCTTCATGATACCTGGTTTGTAGTTGCTCATTTTCATTATGTTCTTTCTTTA-

>JQ710588 Taenia hydatigena voucher MFTH 0005 cytochrome c oxidase subunit 1 (cox1) gene, partial cds; mitochondrial

--ATTATTAGTCATATATGTTTGAGAATAAGCATGAGTCCTGATGCTTTTGGATTCTATGGATTATTATTTGCTATGTTT

TCAATAGTCTGTTTGGGTAGAAGTGTGTGGGGTCATCATATGTTTACTGTTGGATTAGATGTTAAGACTGCTGTTTTTTT

TAGTTCTGTCACTATGATTATAGGTGTGCCTACTGGTATAAAGGTGTTTACTTGGTTATATATGCTTTTAAACTCTCATG

TGAATAAGAGTGATCCTGTTGTTTGATGAATTGTTTCTTTTATAGTTTTGTTTACTTTTGGTGGGGTTACTGGTATTGTG

TTGTCAGCATGTGTATTAGATAAAGTTCTTCATGATACCTGGTTTGTAGTTGCTCATTTTCATTATGTT----------

>JQ710616 Taenia hydatigena voucher MFTH 0095 cytochrome c oxidase subunit 1 (cox1) gene, partial cds; mitochondrial

--ATTATTAGTCATATATGTTTGAGAATAAGCATGAGTCCTGATGCTTTTGGGTTCTATGGATTATTATTTGCTATGTTT

TCAATAGTCTGTTTGGGTAGAAGTGTGTGGGGCCATCATATGTTTACTGTTGGATTAGATGTTAAGACTGCTGTTTTTTT

TAGTTCTGTCACTATGATTATAGGTGTGCCTACTGGTATAAAGGTGTTTACTTGGTTATATATGCTTTTAAACTCTCATG

TGAATAAGAGTGATCCTGTTGTTTGATGAATTGTTTCTTTTATAGTTTTGTTTACTTTTGGTGGGGTTACTGGTATTGTG

TTGTCAGCATGTGTATTAGATAAAGTTCTTCATGATACCTGGTTTGTAGTTGCTCATTTTCATTATGTT----------

>JQ710617 Taenia hydatigena voucher MFTH 0042 cytochrome c oxidase subunit 1 (cox1) gene, partial cds; mitochondrial

--ATTATTAGTCATATATGTTTGAGAATAAGCATGAGTCCTGATGCTTTTGGGTTCTATGGATTATTATTTGCTATGTTT

TCAATAGTCTGTTTGGGTAGAAGTGTGTGGGGTCATCATATGTTTACTGTTGGATTAGATGTTAAGACTGCTGTTTTTTT

TAGTTCTGTCACTATGATTATAGGTGTGCCTACTGGTATAAAGGTGTTTACTTGGTTATATATGCTTTTAAACTCTCATG

TGAATAAGAGTGATCCTGTTGTTTGATGAATTGTTTCTTTTATAGTTTTGTTTACTTTTGGTGGGGTTACTGGTATTGTG

TTGTCAGCATGTGTATTAGATAAAGTTCTTCATGATACCTGGTTTGTAGTTGCTCATTTTCATTATGTT----------

>KT372529 Taenia hydatigena haplotype SR14 cytochrome c oxidase subunit 1 (cox1) gene, partial cds; mitochondrial

-----ATTAGTCATATATGTTTGAGAATAAGCATGAGTCCTGATGCTTTTGGATTCTATGGATTATTATTTGCTATGTTT

TCAATAGTCTGTTTGGGTAGAAGTGTGTGGGGTCATCATATGTTTACTGTTGGATTAGATGTTAAGACTGCTGTTTTTTT

TAGTTCTGTCACTATGATTATAGGTGTGCCTACTGGTATAAAGGTGTTTACTTGGTTATATATGCTTTTAAACTCTCATG

TGAATAAGAGTGATCCTGTTGTTTGATGAATTGTTTCTTTTATAGTTTTGTTTACTTTTGGTGGGGTTACTGGTATTGTG

TTGTCAGCATGTGTATTAGATAAAGTTCTTCATGATACCTGGTTTGTAGTTGCTCATTTTCATTATGTTCT--------

>Sample1

GGATTATTAGTCATATATGTTTGAGAATAAGCATGAGTCCTGATGCTTTTGGGTTCTATGGATTATTATTTGCTATGTTT

TCAATAGTCTGTTTGGGTAGAAGTGTGTGGGGTCATCATATGTTTACTGTTGGATTAGATGTTAAGACTGCTGTTTTTTT

TAGTTCTGTCACTATGATTATAGGTGTGCCTACTGGTATAAAGGTGTTTACTTGGTTATATATGCTTTTAAACTCTCATG

TGAATAAGAGTGATCCTGTTGTTTGATGAATTGTTTCTTTTATAGTTTTGTTTACTTTTGGTGGGGTTACTGGTATTGTG

TTGTCAGCATGTGTATTAGATAAAGTTCTTCATGATACCTGGTTTGTAGTTGCTCATTTTCATTATGTTCTTTCTTTAA

>Sample2

GGATTATTAGTCATATATGTTTGAGAATAAGCATGAGTCCTGATGCTTTTGGATTCTATGGATTATTATTTGCTATGTTT

TCAATAGTCTGTTTGGGTAGAAGTGTGTGGGGTCATCATATGTTTACTGTTGGATTAGATGTTAAGACTGCTGTTTTTTT

TAGTTCTGTCACTATGATTATAGGTGTGCCTACTGGTATAAAGGTGTTTACTTGGTTATATATGCTTTTAAACTCTCATG

TGAATAAGAGTGATCCTGTTGTTTGATGAATTGTTTCTTTTATAGTTTTGTTTACTTTTGGTGGGGTTACTGGTATTGTG

TTGTCAGCATGTGTATTAGATAAAGTTCTTCATGATACCTGGTTTGTAGTTGCTCATTTTCATTATGTTCTTTCTTTAA

>Sample4

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------

--------------------------------------------TGTTTACTTGGTTATATATGCTTTTAAACTCTCATG

TGAATAAGAGTGATCCTGTTGTTTGATGAATTGTTTCTTTTATAGTTTTGTTTACTTTTGGTGGGGTTACTGGTATTGTG

TTGTCAGCATGTGTATTAGATAAACTTCTTCATGATACCTGGTTTGTAGTTGCTCATTTTCATTATGTTCTTTCTTTAA

>Sample5

---------------------------------------------CTTTTGGTTTCTATGGATTATTATTTGCTATGTTT

TCAATAGTCTGTTTGGGTAGAAGTGTGTGGGGTCATCATATGTTTACTGTTGGATTAGATGTTAAGACTGCTGTTTTTTT

TAGTTCTGTCACTATGATTATAGGTGTGCCTACTGGTATAAAGGTGTTTACTTGGTTATATATGCTTTTAAACTCTCATG

TGAATAAGAGTGATCCTGTTGTTTGATGAATTGTTTCTTTTATAGTTTTGTTTACTTTTGGTGGGGTTACTGGTATTGTG

TTGTCAGCATGTGTATTAGATAAAGTTCTTCATGATACCTGGTTTGTAGTTGCTCATTTTCATTATGTTCTTTCTTTAA

>Sample6

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------

-------------------------------------------GTGTTTACTTGGTTATATATGCTTTTAAACTCTCATG

TGAATAAGAGTGATCCTGTTGTTTGATGAATTGTTTCTTTTATAGTTTTGTTTACTTTTGGTGGGGTTACTGGTATTGTG

TTGTCAGCATGTGTATTAGATAAAGTTCTTCATGATACCTGGTTTGTAGTTGCTCATTTTCATTATGTTCTTTCTTTAA

>Sample7

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------

-----------------------------------TCTTTTATAGTTTTGTTTACTTTTGGTGGGGTTACTGGTATTGTG

TTGTCAGCATGTGTATTAGATAAAGTTCTTCATGATACCTGGTTTGTAGTTGCTCATTTTCATTATGTTCTTTCTTTAA

>Sample8

GGATTATTAGTCATATATGTTTGAGAATAAGCATGAGTCCTGATGCTTTTGGATTCTATGGATTATTATTTGCTATGTTT

TCAATAGTCTGTTTGGGTAGAAGTGTGTGGGGTCATCATATGTTTACTGTTGGATTAGATGTTAAGACTGCTGTTTTTTT

TAGTTCTGTCACTATGATTATAGGTGTGCCTACTGGTATAAAGGTGTTTACTTGGTTATATATGCTTTTAAACTCTCATG

TGAACAAGAGTGATCCTGTTGTTTGATGAATTGTTTCTTTTATAGTTTTGTTTACTTTTGGTGGGGTTACTGGTATTGTG

TTGTCAGCATGTGTATTAGATAAAGTTCTTCATGATACCTGGTTTGTAGTTGCTCATTTTCATTATGTTCTTTCTTTAA

>Sample9

GGATTATTAGTCATATATGTTTGAGAATAAGCATGAGTCCTGATGCTTTTGGATTCTATGGATTATTATTTGCTATGTTT

TCAATAGTCTGTTTGGGTAGAAGTGTGTGGGGTCATCATATGTTTACTGTTGGATTAGATGTTAAGACTGCTGTTTTTTT

TAGTTCTGTCACTATGATTATAGGTGTGCCTACTGGTATAAAGGTGTTTACTTGGTTATATATGCTTTTAAACTCTCATG

TGAATAAGAGTGATCCTGTTGTTTGATGAATTGTTTCTTTTATAGTTTTGTTTACTTTTGGTGGGGTTACTGGTATTGTG

TTGTCAGCATGTGTATTAGATAAAGTTCTTCATGATACCTGGTTTGTAGTTGCTCATTTTCATTATGTTCTTTCTTTAA

>Sample10

GGATTATTAGTCATATATGTTTGAGAATAAGCATGAGTCCTGATGCTTTTGGATTCTATGGATTATTATTTGCTATGTTT

TCAATAGTCTGTTTGGGTAGAAGTGTGTGGGGTCATCATATGTTTACTGTTGGATTAGATGTTAAGACTGCTGTTTTTTT

TAGTTCAGTCACTATGATTATAGGTGTGCCTACTGGTATAAAGGTGTTTACTTGGTTATATATGCTTTTAAACTCTCATG

TGAATAAGAGTGATCCTGTTGTTTGATGAATTGTTTCTTTTATAGTTTTGTTTACTTTTGGTGGGGTTACTGGTATTGTG

TTGTCAGCATGTGTATTAGATAAAGTTCTTCATGATACCTGGTTTGTAGTTGCTCATTTTCATTATGTTCTTTCTTTAA

>Sample11

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------

-----------------------------------------------TTACTTGGTTATATATGCTTTTAAACTCTCATG

TGAATAAGAGTGATCCTGTTGTTTGATGAATTGTTTCTTTTATAGTTTTGTTTACTTTTGGTGGGGTTACTGGTATTGTG

TTGTCAGCATGTGTATTAGATAAAGTTCTTCATGATACCTGGTTTGTAGTTGCTCATTTTCATTATGTTCTTTCTTTAA

 

 

 

 

.