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OJB®
Online Journal of
Bioinformatics ©
7 (1) : 15-21, 2006
Clusterer:
extendable java application for sequence grouping and cluster analyses
Klepac-Ceraj V2 3 *, Ceraj I1 *, Polz MF2
1Information Services and Technology, 2Department
of Civil and Environmental Engineering, Massachusets
Institute of Technology (MIT),
ABSTRACT
Klepac-Ceraj V, Ceraj I, Polz MF, Clusterer: extendable java application for sequence
grouping and cluster analyses, Online J Bioinformatics, 7 (1) : 15-21, 2006. A Java application with a graphical user interface which assigns nucleic
acid and protein sequences to clusters for each particular sequence divergence level, is described. The program provides graphical and
tabular outputs of composition of clustered data, distributions of cluster
sizes and rarefaction curves for all divergence levels. A summary of all
sequence clusters for all sequence divergence levels is presented in a single
graph, providing an overview of how sequences compose the clusters at a
particular divergence level. Clusterer is available
on UNIX, MacOS and Windows operating systems and is
under MIT license. There are precompiled binaries for available for Java WebStart and as an applet as well as sources.
Key-Words: Java, interface, cluster assignment.